Gossypium hirsutum
| Analysis | Locus | Causal Agent (Genus & Species) | Molecular Marker Systems |
| High Fiber Strength (QTL) | - | - | - |
| Ligon Lintless | Li1 | - | - |
| Root Knot Nematode | rkn1 | Meloidogyne incognita | - |
| Fertility-restoring Gene | Rf1 | - | - |
| Variety Identification and Fingerprinting | - | - | SCAR, CAPS, RAPD, STS, SSR, TRAP, SRAP |