Glycine max
| Analysis | Locus | Causal Agent (Genus & Species) | Molecular Marker Systems |
| Sclerotinia Stem Rot (QTL) | - | Sclerotinia sclerotiorum | - |
| Brown Stem Rot (BSR) | Rbs1, Rbs2 | Phialophora gregata | - |
| Long Juvenile Trait Locus | - | Delayed Flowering Under Short Days | - |
| Soybean Cyst Nematode (SCN) | rhg1 | Heterodera glycines | - |
| Phytophthora Root Rot | Rps1, Rps2, Rps3, Rps4, Rps5, and Rps6 | Phytophthora megasperma f. sp. glycinea | - |
| Soybean Bud Blight | - | Tobacco Ringspot Virus (TRSV) | - |
| Soybean Mosaic Virus (SMV) | - | Soybean Mosaic Virus (SMV) | - |
| Soybean Hard Seededness | - | - | - |
| Variety Identification and Fingerprinting | - | - | SCAR, CAPS, RAPD, STS, SSR, TRAP, SRAP |