Tomato
Lycopersicon esculentum
| Analysis | Locus | Causal Agent (Genus & Species) | Molecular Marker Systems |
| Bacterial Canker | Cmm | Clavibacter michiganensis subsp. michiganensis | - |
| Bacterial Spot | Bs4 | Xanthomonas compestris pv. vesicatoria | - |
| Bacterial Spot | Rx3 | Xanthomonas compestris pv. vesicatoria | - |
| Root Knot Nematode | Mi | Meloidogyne incognita | - |
| Root Knot Nematode | Mi or Mij | Meloidogyne incognita | - |
| Root Knot Nematode | Mij or Mi-1 | Meloidogyne incognita | - |
| Bacterial Speck | Pto | Pseudomonas syringe pv. tomato | - |
| Bacterial Speck | Pto-1 | Pseudomonas syringae | - |
| Fusarium Wilt (I2) | I2 | Fusarium oxysporium | - |
| Fusarium Wilt (I3) | I3 | Fusarium oxysporium | - |
| Fusarium Crown & Root Rot | Frl | Fusarium oxysporum f. sp. Radicis-lycopersici | - |
| Tomato Spotted Wilt Virus | Sw-5 | Tospovirus--a ssRNA virus | - |
| Tomato Mosaic Virus (ToMV) | Tm-1 | ToMV | - |
| Tomato Mosaic Virus (ToMV) | Tm-2 | ToMV | - |
| Tomato Mosaic Virus (ToMV) | Tm22 | ToMV | - |
| Powdery Mildew | Ol-1 | Oidium lycopersicum | - |
| Powdery Mildew | Ol-2 | Oidium lycopersicum | - |
| Powdery Mildew | Ol-4 | Oidium lycopersicum | - |
| Verticillium Wilt | Ve-1 | Verticillium dahliae | - |
| Corky Root Rot | py-1 | Pyrenochaeta lycopersici | - |
| Sterility | ps | - | - |
| Beta-carotene | B | - | - |
| Tomato Yellow Leaf Curl Virus (TYLCV) | Ty-1 | - | - |
| Tomato Yellow Leaf Curl Virus (TYLCV) | Ty-2 | - | - |
| Tomato Yellow Leaf Curl Virus (TYLCV) | Ty-3 | - | - |
| Early Fruit Ripening (QTL) | erl2.1 | - | - |
| Parthenocarpic Fruit (pat) | Pat | - | - |
| Jointless-2 | J-2 | - | - |
| Leaf Mold | Cf4 | Cladosporium fulvum | - |
| Leaf Mold | Cf5 | Cladosporium fulvum | - |
| Leaf Mold | Cf6 | Cladosporium fulvum | - |
| Variety Identification and Fingerprinting | - | - | SCAR, CAPS, RAPD, STS, SSR, TRAP, SRAP |