Wheat
Triticum aestivum
| Analysis | Locus | Causal Agent (Genus & Species) | Molecular Marker Systems |
| Insect resistance. Hessian fly Gene Hdicoccum | - | Hessian fly | - |
| Quality traits. Pre-harvest sprouting tolerance (PHS) | - | - | - |
| Disease resistance. Wheat Stem Sawfly (WSS) | - | - | - |
| Virus resistance. Barley Yellow Dwarf Virus (BYDV) | Bdv2 | - | - |
| Fertility-Restoring Gene (CMS) | D2 | - | - |
| Insect resistance. Russian wheat aphid (RWA) | Dn2, Dn4 | - | - |
| Insect resistance. Russian Aphid Resistance | Dn5 | Diuraphis noxia | - |
| Disease resistance. Eyespot | Ep-D1b | - | - |
| Insect resistance. Greenbug | Gb3 | - | - |
| Quality traits. High grain protein content | Gpc-B1 | - | - |
| Insect resistance. Hessian fly Gene H13 | H13 | Hessian fly | - |
| Insect resistance. Hessian fly Gene H25 | H25 | Hessian fly | - |
| Insect resistance. Hessian fly Gene H31 | H31 | Hessian fly | - |
| Hessian Fly Resistance Gene | H6 | Mayetiola destructor say | - |
| Insect resistance. Hessian fly Gene H9 | H9 | Hessian fly | - |
| Disease resistance. Leaf Rust | Lr19 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf Rust | Lr19 & Lr24 | Puccinia recondita f. sp. tritici | - |
| Quality traits. Semolina Color | Lr19 and Y | - | - |
| Disease resistance. Leaf rust | Lr21 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf Rust Resistance | Lr29 - Lr25 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf Rust Resistance | Lr34 - Yr18 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf and stripe rust resistance | Lr37-Yr17-Sr38 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf rust | Lr39 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf rust | Lr46 - Yr29 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf rust. Co-dominant | Lr47 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf rust A genome | Lr47 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf rust S genome | Lr47 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf Rust Resistance | Lr50 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Leaf Rust Resistance | Lr51 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Powdery Mildew | MIRE | Blumeria graminis f. sp. tritici | - |
| Wheat Pairing Homoeologous | Ph1 | - | - |
| Quality traits. Grain Texture Pina-D1 | Pina-D1 | - | - |
| Quality traits. Grain Texture Pinb-D1b | Pinb-D1b | - | - |
| Common Powdery Mildew | Pm1 & Pm2 | Erisiphe graminis D.C. f. sp. tritici | - |
| Disease resistance. Powdery Mildew | Pm13 | Erisiphe graminis D.C. ex merat f. sp. tritici | - |
| Disease resistance. Powdery Mildew | Pm21 | Blumeria graminis f. sp. tritici | - |
| Disease resistance. Powdery Mildew | Pm3 | Blumeria graminis f. sp. tritici | - |
| Disease resistance. Stem & Leaf Rust | Sr39 & Lr35 | Puccinia graminis pers. f. sp. tritici | - |
| Disease resistance. Stem and Leaf Rust Resistance | Sr39 / Lr35 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Septoria Tritici Blotch Resistance | Stb4 | - | - |
| Vernalization Requirement Genes | Vrn-B1 | - | - |
| Virus resistance. Wheat Streak Mosaic Virus (WSMV) | Wsm1 | - | - |
| Quality traits. Waxy mutants null alleles of waxy genes (4) | Wx | - | - |
| Quality traits. Waxy mutants null allele Wx-D1 | Wx | - | - |
| Quality traits. Waxy mutants null allele Wx-A1a | Wx | - | - |
| Quality traits. Waxy mutants null allele Wx-A1b | Wx | - | - |
| Disease resistance. Stripe rust | Yr15 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Stripe rust | Yr5 | Puccinia recondita f. sp. tritici | - |
| Disease resistance. Yellow Rust | Yr5 | Puccinia striiformis f. sp. tritici | - |
| Wheat head blight (Wheat Scab) | - | Fusarium graminearum | - |
| Variety Identification and Fingerprinting | - | - | SCAR, CAPS, RAPD, STS, SSR, TRAP, SRAP |